Journals
  • D. Sorokin, I. Peterlík, V. Ulman, D. Svoboda, T. Nečasová, K. Morgaenko, L. Eisellová, L. Tesařová, M. Maška. FiloGen: A Model-Based Generator of Synthetic 3D Time-Lapse Sequences of Single Motile Cells with Growing and Branching Filopodia. IEEE Trans. on Medical Imaging, 12 pages. to appear. 2018.
  • J. G. Guevara, I. Peterlík, M.-O. Berger, S. Cotin. Biomechanics-based graph matching for augmented CT-CBCT. International Journal of Computer Assisted Radiology and Surgery, pp. 1 – 9, 2018.
  • I. Peterlík, H. Courtecuisse, R. Rohling, P. Abolmaesumi, C. Nguan, S. Cotin, S. Salcudean. Fast Elastic Registration of Soft Tissues under large deformations. Medical Image Analysis, vol. 45, pp. 24 – 40, 2018.
  • R. Plantefève, I. Peterlík, S. Cotin. Intraoperative Biomechanical Registration of the Liver: Does the Heterogeneity of the Liver Matter? To Appear in Elsevier Journal on Innovation and Research in BioMedical Engineering, vol. 39, No 1, pp. 18 – 25, 2018.
  • D. Sorokin, I. Peterlík, M. Tektonidis, K. Rohr, P. Matula. Non-rigid Contour-Based Registration of Cell Nuclei in 2D Live Cell Microscopy Images Using a Dynamic Elasticity Model. IEEE Transactions on Medical Imaging, vol. 37, No 1, pp. 173 – 184, 2018.
  • R. Plantefève, I. Peterlík, N. Haouchine, S. Cotin. Patient-Specific Biomechanical Modeling for Guidance During Minimally-Invasive Hepatic Surgery. Annals of biomedical engineering, Springer, vol. 44, no. 1, pp. 139 – 153, 2016.
  • N. Hamzé, I. Peterlík, S. Cotin, C. Essert. Preoperative trajectory planning for percutaneous procedures in deformable environments. In Computerized Medical Imaging and Graphics, Elsevier, U.S., vol. 47, no. 1, pp. 16 – 28, 2016.
  • N. Haouchine, S. Cotin, I. Peterlík, M. S. Lopez, E. Kerrien, and M.-O. Berger. Impact of Soft Tissue Heterogeneity on Augmented Reality for Liver Surgery. In IEEE Transactions on Visualization and Computer Graphics, vol. 21, no. 5, pp. 584 – 597, 2015. 
  • P. Moreira, I. Peterlík, M. Herink, C. Duriez, S. Cotin, and S. Misra. Modelling Prostate Deformation: SOFA versus Experiments. In Mechanical Engineering Research, vol. 3, no. 2, 2013.
  • R. Jiřík, I. Peterlík, N. Ruiter, J. Fousek, R. Dapp, M. Zapf, and J. Jan. Sound-speed image reconstruction in sparse-aperture 3d ultrasound transmission tomography. In IEEE Trans. Ultrasonics, Ferroelectrics and Frequency Control, vol. 59(2), pp. 254–264, February 2012
  • I. Peterlík, M. Nouicer, C. Duriez, S. Cotin, and A. Kheddar. Constraint- based haptic rendering of multirate compliant mechanisms. IEEE Trans. Haptics, Special Issue on Haptics in Medicine and Clinical Skill Acquisition, vol. 4, pp. 175–187, July 2011.
  • I. Peterlík and J. Filipovič. Distributed construction of configuration spaces for real-time haptic deformation modeling. IEEE Trans. Industrial Electronics, Special Section on Human System Interaction, vol. 58, pp. 3205–3212, August 2011.
  • I. Peterlík, M. Sedef, C. Basdogan, and L. Matyska. Real-time visio-haptic interaction with static soft tissue models having geometric and material nonlinearity. Computers & Graphics, vol. 34, no. 1, pp. 43–54, 2010.
  • A. Filipík, J. Jan, and I. Peterlík. Time-of-flight based calibration of an ultrasonic computed tomography system. Radioengineering, vol. 21(1), pp. 533–544. April 2012.
  • I.Peterlík, R.Jiřík, N.Ruiter, and J.Jan. Ultrasound attenuation transmission tomography using regularized image reconstruction. Radioengineering, vol. 12, no. 2, pp. 251–254, 2008.
Book Chapters
  • I. Peterlík, L. Matyska, and J. Filipovič. Haptic interaction with complex models based on precomputations. In Advances in Haptics,           pp. 333–356, IN-TECH, 2010
  • F. Faure et al. SOFA, a Multi-Model Framework for Interactive Physical Simulation. In Soft Tissue Biomechanical Modeling for Computer Assisted Surgery, pp. 283 – 323, Springer, 2012
Conferences
  • S. Nikolaev, I. Peterlík, S. Cotin. Stochastic Correction of Boundary Conditions during Liver Surgery. Accepted for 9th IEEE Color and  Visual Symposium, Oslo, Norway, 2018.
  • R. Plantefève, S. Kadoury, A. Tang,  I. Peterlík. Robust Automatic Graph-Based Skeletonization of Hepatic Vascular Trees, LNCS, vol. 10552, pp. 20–28. Springer, Cham, 2017.
  • I. Peterlík, N. Haouchine, L. Ručka and S. Cotin. Image-driven Stochastic Identification of Boundary Conditions for Predictive Simulation. In International Conference on Medical Image Computing and Computer-Assisted Intervention, pp. 548-556. Springer, Cham, 2017.
  • L. Ručka and I. Peterlík. Fast reconstruction of image deformation field using radial basis function. In. Proc. of International Symposium on Biomedical Imaging, pp. 1146 – 1150, 2017. 
  • A. Mendizabal, R. Bessard-Duparc, H. Phuoc Bui, C. Paulus, I. Peterlík and S. Cotin. Face-based smoothed finite element method for real-time simulation of soft tissue. In proc. of SPIE 10135, Medical Imaging 2017: Image-Guided Procedures, Robotic Interventions, and Modeling. 101352H. 8 pages, 2017.
  • D. Sorokin, I. Peterlík, V. Ulman, D. Svoboda and M. Maška. Model-Based Generation of Synthetic 3D Time-Lapse Sequences of Motile Cells with Growing Filopodia. In. Proc. of International Symposium on Biomedical Imaging, pp. 822 – 826, 2017. 
  • R. Trivisonne, I. Peterlík, S. Cotin and H. Courtecuisse. 3D Physics-Based Registration of 2D Dynamic MRI Data. In In Medicine Meets Virtual Reality 22: NextMed/MMVR22, pp. 432 – 438, 2016
  • I.Peterlík and A. Klíma.Towards an efficient data assimilation in physically-based medical simulations. In Proc. of IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Washington, D.C. USA, pp. 1412 – 1419, 2015.
  • D. Svoboda, V. Ulman, and I. Peterlík. On proper simulation of chromatin structure in static images as well as in time-lapse sequences in fluorescence microscopy. in Proceedings of 2015 IEEE International Symposium on Biomedical Imaging, Engineering in Medicine and Biology Society, pp. 712 – 716, 2015.
  • J. Bosman, N. Haouchine, J. Dequidt, I. Peterlík, S. Cotin, and C. Duriez. The role of ligaments: Patient-specific or scenario-specific? In Biomedical Simulation (F. Bello and S. Cotin, eds.), vol. 8789 of Lecture Notes in Computer Science, pp. 228–232, Springer International Publishing, 2014.
  • R. Plantefeve, I. Peterlík, H. Courtecuisse, R. Trivisonne, J.-P. Radoux, and S. Cotin. Atlas-based Transfer of Boundary Conditions for Biomechanical Simulation. In MICCAI - 17th International Conference on Medical Image Computing and Computer-Assisted Intervention, (Boston, United States), pp. 33–40, Springer, Sept. 2014.
  • N. Haouchine, J. Dequidt, I. Peterlík, E. Kerrien, M.-O. Berger, and S. Cotin. Towards an Accurate Tracking of Liver Tumors for Augmented Reality in Robotic Assisted Surgery. In IEEE International Conference on Robotics and Automation (ICRA), (Hong Kong, China), pp. 4121–4126, June 2014.
  • I. Peterlík, H. Courtecuisse, C. Duriez, and S. Cotin. Model-Based Identification of Anatomical Boundary Conditions in Living Tissues. In Information Processing in Computer-Assisted Interventions (D. Stoyanov, D. Collins, I. Sakuma, P. Abolmaesumi, and P. Jannin, eds.), vol. 8498 of Lecture Notes in Computer Science, pp. 196–205, Springer International Publishing, 2014.
  • I. Peterlík, T. Golembiovsky, C. Duriez, and S. Cotin. Complete Real-Time Liver Model Including Glisson’s Capsule, Vascularization and Parenchyma. In Medicine Meets Virtual Reality 21: NextMed/MMVR21, vol. 196, pp. 312–319, IOS Press, 2014.
  • H. Courtecuisse, I. Peterlík, R. Trivisonne, C. Duriez, and S. Cotin. Constraint-based Simulation for Non-Rigid Real-time Registration. In Medicine Meets Virtual Reality 21: NextMed/MMVR21, vol. 196, pp. 76– 82, IOS Press, 2014.
  • F. Dervaux, I. Peterlík, J. Dequidt, S. Cotin, and C. Duriez. Haptic rendering of interacting dynamic deformable objects simulated in real-time at different frequencies. In Intelligent Robots and Systems (IROS), 2013 IEEE/RSJ International Conference on, pp. 2010–2016, IEEE, 2013.
  • N. Haouchine, J. Dequidt, I. Peterlík, E. Kerrien, M.-O. Berger, and S. Cotin. Image-guided Simulation of Heterogeneous Tissue Deformation For Augmented Reality during Hepatic Surgery. In ISMAR – IEEE International Symposium on Mixed and Augmented Reality 2013, (Adelaide, Australia), pp. 199–208, Oct. 2013. Best paper award, honorable mention.
  • I. Peterlík, C. Duriez, and S. Cotin. Modeling and real-time simulation of a vascularized liver tissue. In MICCAI2012. LNCS, vol. 7510, pp. 50–57. 2012.
  • I. Peterlík, C. Duriez, and S. Cotin. Asynchronous haptic simulation of contacting deformable objects with variable stiffness. In IROS 2011, pp. 2608–2613, 2011.
  • R. Jiřík, I. Peterlík, J. Fousek, J. Kratochvíla, J. Jan, M. Zapf, and N. Ruiter. Synthetic aperture focusing in 3d ultrasound transmission tomography. In Proceedings of Biosignal 2010: Analysis of Biomedical Signals and Images, 2010.
  • J. Filipovič, I. Peterlík, and L. Matyska. On-line precomputation algorithm for real-time haptic interaction with non-linear deformable bodies.   In Proceedings of The Third Joint EuroHaptics Conference and Symposium on Haptic Interfaces for Virtual Environments and Teleoperator Systems, pp. 24–29, 2009.
  • I. Peterlík. Efficient precomputation of configuration space for haptic deformation modeling. In Proceedings of Conference on Human System Interactions, pp. 225–230, IEEE Xplore, 2008 (best paper award).
  • I. Peterlík and L. Matyska. Haptic interaction with soft tissues based on state-space approximation. In EuroHaptics’08: Proceedings of the 6th international conference on Haptics, (Berlin, Heidelberg), pp. 886–895, Springer-Verlag, 2008.
  • I.Peterlík, R.Jiřík, J.Jan, and N.Ruiter. Ultrasound attenuation transmission tomography using regularized image reconstruction. Analysis of Biomedical Signals and Images, vol. 19, no. 1, pp. 251–254, 2008.
  • D.Hemzal, I.Peterlík, J.Roleček, and J.Jan. 3D simulation of diffraction in ultrasonic computed tomography. In Proceedings of the IEEE 30th Annual International Conference on Engineering in Medicine and Biology Society, pp. 454–457, 2008.
  • A.Filipík, J.Jan, I.Peterlík, D.Hemzal, N.Ruiter, and R.Jiřík, “Modified time-of-flight based calibration approach for ultrasonic computed tomography. In Proceedings of the IEEE 30th Annual International Conference on Engineering in Medicine and Biology Society, pp. 2181–2184. 2008.
  • A.Filipík, J.Jan, I.Peterlík, D.Hemzal, and R.Jiřík. Two aspects of calibrating a 3d ultrasonic computed-tomography system. In Proceedings IFMBE – NBC 2008, pp. 497–500, Springer. Berlin, 2008.
  • I. Peterlík and L. Matyska. An algorithm of state-space precomputation allowing non-linear haptic deformation modelling using finite element method. In WHC ’07: Proceedings of the Second Joint EuroHaptics Conference and Symposium on Haptic Interfaces for Virtual Environment and Teleoperator Systems, (Washington, DC, USA), pp. 231–236, 2007.
  • I. Peterlík and L. Matyska. Contact modeling in haptic interaction based on off-line precomputation algorithm. Simulation in Healthcare, Society for Simulation in Healthcare, vol. 2, no. 2, pp. 146–146, 2007.
  • A.Filipík, I.Peterlík, D.Hemzal, J.Jan, and R.Jiřík. Calibrating an ultrasonic computed tomography system using a time-of-flight based positioning algorithm. in Proc. of 29th IEEE-EMBS conference, pp. 2146–2149, IEEE- EMBS, Lyon, 2007.
  • I. Peterlík. Distributed precomputation of state-space for haptic interaction with non-linear model of liver. in Proceedings of MEMICS07 Third Doctoral Workshop on Mathematical and Engineering Methods in Computer Science, pp. 169–176, 2008. best paper award.
  • I.Peterlík, R.Jiřík, R.Stotzka, and N.Ruiter. Reconstruction technique for ultrasound transmission tomography. In Proceedings of International Conference ITAB 2006, non–paginated, 6 pages, 2006.
  • I. Peterlík and A. Křenek. Haptically driven travelling through conformational space. In Worldhaptics’05: Proceedings of the First Joint Eurohaptics Conference and Symposium on Haptic Interfaces for Virtual Environment and Teleoperator Systems, pp. 342–347, 2005.
  • A. Křenek, I. Peterlík, and L. Matyska. Building 3d state spaces of virtual environments with a TDS-based algorithm. in Recent Advances in Parallel Virtual Machine and Message Passing Interface, Berlin: Springer-Verlag LNCS, 2003.

Thesis